Genome-wide association analysis identifies a mutation in the thiamine transporter 2 (SLC19A3) gene associated with Alaskan Husky encephalopathy.

TitleGenome-wide association analysis identifies a mutation in the thiamine transporter 2 (SLC19A3) gene associated with Alaskan Husky encephalopathy.
Publication TypeJournal Article
Year of Publication2013
AuthorsVernau KM, Runstadler JA, Brown EA, Cameron JM, Huson HJ, Higgins RJ, Ackerley C, Sturges BK, Dickinson PJ, Puschner B, Giulivi C, G Shelton D, Robinson BH, DiMauro S, Bollen AW, Bannasch DL
JournalPLoS One
Volume8
Issue3
Paginatione57195
Date Published2013
ISSN1932-6203
KeywordsAnimals, Base Sequence, Biological Transport, Brain Diseases, Metabolic, Dog Diseases, Dogs, Exons, Female, Genetic Loci, Genome-Wide Association Study, Heterozygote, Homozygote, Humans, Leigh Disease, Male, Membrane Transport Proteins, Molecular Sequence Data, Mutation, Polymorphism, Single Nucleotide, Thiamine
Abstract

<p>Alaskan Husky Encephalopathy (AHE) has been previously proposed as a mitochondrial encephalopathy based on neuropathological similarities with human Leigh Syndrome (LS). We studied 11 Alaskan Husky dogs with AHE, but found no abnormalities in respiratory chain enzyme activities in muscle and liver, or mutations in mitochondrial or nuclear genes that cause LS in people. A genome wide association study was performed using eight of the affected dogs and 20 related but unaffected control AHs using the Illumina canine HD array. SLC19A3 was identified as a positional candidate gene. This gene controls the uptake of thiamine in the CNS via expression of the thiamine transporter protein THTR2. Dogs have two copies of this gene located within the candidate interval (SLC19A3.2 - 43.36-43.38 Mb and SLC19A3.1 - 43.411-43.419 Mb) on chromosome 25. Expression analysis in a normal dog revealed that one of the paralogs, SLC19A3.1, was expressed in the brain and spinal cord while the other was not. Subsequent exon sequencing of SLC19A3.1 revealed a 4bp insertion and SNP in the second exon that is predicted to result in a functional protein truncation of 279 amino acids (c.624 insTTGC, c.625 C>A). All dogs with AHE were homozygous for this mutation, 15/41 healthy AH control dogs were heterozygous carriers while 26/41 normal healthy AH dogs were wild type. Furthermore, this mutation was not detected in another 187 dogs of different breeds. These results suggest that this mutation in SLC19A3.1, encoding a thiamine transporter protein, plays a critical role in the pathogenesis of AHE.</p>

DOI10.1371/journal.pone.0057195
Alternate JournalPLoS ONE
PubMed ID23469184
PubMed Central IDPMC3587633
Grant ListP30 CA093373 / CA / NCI NIH HHS / United States